As the days get shorter and the leaves transition into a breathtaking tapestry of colors, I find myself reaching for recipes that capture the essence of fall. Enter my Pumpkin Morning Glory Muffins: a wholesome, healthy breakfast that’s as delightful as a crisp autumn morning. Packed with shredded carrots, apples, and a handful of crunchy pecans, these muffins are a feast for both the eyes and taste buds. Whether you’re looking to whip up something quick to grab on the go or treat the family to a cozy weekend breakfast, they check all the boxes. Plus, not only are they freezer-friendly for those busy mornings, but they also embrace the warmth and richness of seasonal flavors. Curious how you can bring that fall magic into your kitchen? Let’s bake!

Why are Pumpkin Morning Glory Muffins special?
Delightful blend of flavors: These muffins combine pumpkin, carrots, and apples, creating a scrumptious taste that’s perfect for fall.
Hearty and Healthy: Packed with whole grains, fiber, and good fats, they’re a guilt-free indulgence you can enjoy guilt-free.
Easy to Make: With simple steps and minimal prep time, these muffins are perfect for the busy baker; they come together in just one bowl!
Versatile Treat: Enjoy them warm for breakfast or as a snack any time of day. Pair it with a hot beverage or a side of fresh fruit for a complete experience.
Freezer-Friendly: Make a batch ahead and store them for up to three months. Just reheat, and you have a quick, wholesome breakfast ready to go!
These muffins are not only delicious but also provide that cozy, comforting feeling reminiscent of warm kitchens filled with the scent of baked goods. Don’t forget to check out my Best Fluffy Pancakes Recipe for more breakfast inspiration!
Pumpkin Morning Glory Muffin Ingredients
• Here’s what you’ll need to whip up these cozy delights!
For the Batter
- Whole Wheat Flour – Provides structure and fiber; can substitute with all-purpose flour for a slightly lighter muffin.
- All-Purpose Flour – Adds softness; can be replaced with extra whole wheat flour if desired.
- Light Brown Sugar – Provides sweetness and moisture; granulated sugar or coconut sugar works as a substitute.
- Baking Powder – Acts as a leavening agent to help muffins rise perfectly.
- Baking Soda – An essential lift provider; don’t substitute this ingredient.
- Pumpkin Spice – Infuses essential fall flavor; replace with a mix of cinnamon and nutmeg if you don’t have it.
- Cinnamon – Enhances overall warmth and sweetness.
- Salt – Balances sweetness and enhances flavor.
- Pumpkin Puree – Brings moisture and rich pumpkin flavor; ensure it’s pure pumpkin, not pie filling.
- Unsweetened Applesauce – Adds moisture and a bit of sweetness; can be swapped with mashed banana.
- Coconut Oil – Contributes richness and moisture; melted butter or vegetable oil is a good substitute.
- Shredded Apple – Delivers freshness and natural sweetness; feel free to use your favorite apple variety.
- Vanilla Extract – Adds lovely aroma and sweetness.
- Grated Carrot – Adds a nutritional boost and moisture to the mix.
- Dried Cranberries – Provides tartness and chewiness; raisins or other dried fruits can replace them.
- Flaked Coconut – Adds texture and flavor; can be omitted or replaced with chopped nuts if avoiding coconut.
- Pecans – Provides crunch and flavor; swap with walnuts or omit for a nut-free version.
With these ingredients, you’ll be all set to create delightful Pumpkin Morning Glory Muffins that embody everything cozy and inviting about fall!
Step‑by‑Step Instructions for Pumpkin Morning Glory Muffins
Step 1: Preheat and Prepare
Begin by preheating your oven to 400°F (200°C). While the oven warms up, line a 12-cup muffin tin with paper liners to prevent sticking. This will make your cleanup a breeze and help create that perfect muffin shape, ready to fill with the delicious Pumpkin Morning Glory Muffins batter.
Step 2: Mix Dry Ingredients
In a medium bowl, whisk together the whole wheat flour, all-purpose flour, light brown sugar, baking powder, baking soda, pumpkin spice, cinnamon, and salt. Ensure all the dry ingredients are well combined, which will create a uniform base for your muffins. This step is crucial for achieving that delightful texture in your Pumpkin Morning Glory Muffins.
Step 3: Combine Wet Ingredients
In a large bowl, whisk together the pumpkin puree, unsweetened applesauce, melted coconut oil, shredded apple, vanilla extract, and grated carrot. Mix these ingredients until they are fully blended and smooth. This harmonious combination of wet ingredients will infuse your Pumpkin Morning Glory Muffins with moisture and flavor, giving them a delectable richness.
Step 4: Incorporate Dry Mixture
Gradually fold the dry ingredients from the medium bowl into the wet ingredients, stirring gently with a spatula. Take care not to overmix; you want just enough blending for the ingredients to combine without losing the lightness of the batter. Your Pumpkin Morning Glory Muffins will be fluffy and tender as a result of this careful mixing.
Step 5: Add Extras
Now, gently fold in the dried cranberries, flaked coconut, and chopped pecans until they’re evenly distributed throughout the batter. This addition will add bursts of flavor and delightful textures in every bite, making your Pumpkin Morning Glory Muffins even more enticing.
Step 6: Fill Muffin Cups
Divide the batter evenly among the prepared muffin cups, filling each about two-thirds full. This ensures that the muffins have enough space to rise without overflowing during baking. Each cup will give you a beautifully shaped Pumpkin Morning Glory Muffin that is ready to bake to golden perfection.
Step 7: Bake to Perfection
Place the muffin tin into the preheated oven and bake for 24 to 28 minutes. Keep an eye on them, and check for doneness by inserting a toothpick into the center; it should come out clean or with a few crumbs attached. This indicates that your Pumpkin Morning Glory Muffins are perfectly baked and ready to enjoy!
Step 8: Cool and Serve
Once baked, allow the muffins to cool in the pan for about 10 minutes. Then, transfer them to a wire rack to cool completely. These Pumpkin Morning Glory Muffins can be served warm, at room temperature, or even chilled, making them a versatile treat for any time of day.

How to Store and Freeze Pumpkin Morning Glory Muffins
Room Temperature: Store in an airtight container for up to 3 days to keep them fresh and delicious without drying out.
Fridge: If you prefer a chillier treat, you can refrigerate your muffins for up to a week. Just ensure they’re sealed well to maintain moisture.
Freezer: Freeze muffins individually wrapped in plastic wrap and placed in a freezer-safe bag for up to 3 months. This makes it easy to grab one for a quick breakfast!
Reheating: To enjoy, simply reheat them in the microwave for about 15-20 seconds or in a toaster oven until warmed through, restoring that fresh-baked taste!
Make Ahead Options
These Pumpkin Morning Glory Muffins are a fantastic choice for busy weeknights or mornings! You can prepare the dry ingredients (flours, sugars, spices, and leavening agents) in advance and store them in an airtight container for up to 3 days. Moreover, you can also grate the carrots and apples ahead of time, refrigerating them in separate bags overnight to maintain their freshness. When you’re ready to bake, simply combine the wet ingredients with the prepared dry mixture, fold in your added goodies, and bake as directed. This way, you’ll have delightful muffins without the hassle, perfect for those on-the-go mornings!
What to Serve with Pumpkin Morning Glory Muffins
Elevate your breakfast experience with flavorful companions that highlight the cozy essence of fall mornings.
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Fresh Fruit Medley: A colorful assortment of seasonal fruits like pears and apples adds brightness and freshness alongside the muffins.
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Creamy Yogurt: A dollop of Greek yogurt provides a creamy contrast, enriching each bite while adding protein and coolness to the warm muffins.
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Nut Butter Spread: Slather some almond or peanut butter for a luscious, nutty flavor that enhances the muffins’ natural sweetness and nutrition.
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Maple Syrup Drizzle: A light drizzle of pure maple syrup adds a sweet, caramelized richness that pairs beautifully with the pumpkin spices.
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Warm Tea or Coffee: A steaming cup of spiced chai tea or a robust coffee creates a comforting drink pairing, rounding out the warmth of your fall-inspired breakfast.
These combinations promise to transform your Pumpkin Morning Glory Muffins into a memorable meal, making mornings feel special and indulgent. Enjoy!
Pumpkin Morning Glory Muffins: Customization Galore
Feel free to make these delightful muffins your own—there are so many fantastic twists you can explore!
- Gluten-Free: Substitute almond flour for the whole wheat and all-purpose flours for a gluten-free treat.
- Extra Sweetness: Add chocolate chips to the batter for a sweet, indulgent surprise in every bite.
- Raisins or Figs: Swap dried cranberries for raisins or chopped figs to create a different fruity flavor profile.
- Nut-Free: Omit the pecans and replace them with cooked quinoa or sunflower seeds for added texture without the nuts.
- Zesty Twist: Mix in some citrus zest—like orange or lemon—for a refreshing brightness that complements the pumpkin.
- Flavor Boost: Enhance the spiciness by adding extra pumpkin spice, cinnamon, or a hint of ginger to kick things up a notch!
- Coconut-Free: If you’re avoiding coconut, simply leave out the flaked coconut and add more chopped nuts instead for crunch.
- Vegan Version: Use flax eggs, coconut oil, and dairy-free alternatives to make these muffins plant-based friendly.
Feeling adventurous? You can also sprinkle some toppings before baking, like oats or seeds, to add more texture. And if you’re looking for more inspiring breakfast ideas, don’t forget to try these Blueberry Protein Muffins for another wholesome start to your day!
Expert Tips for Pumpkin Morning Glory Muffins
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Mixing Matters: Don’t overmix the batter! Gently folding the dry ingredients into the wet ensures fluffy Pumpkin Morning Glory Muffins.
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Baking Time: Start checking for doneness at 24 minutes. Overbaking can lead to dry muffins, so catch them while they’re still moist!
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Cool Time: Allow muffins to cool in the pan for 10 minutes before transferring to a rack. This step enhances their texture and helps them hold their shape.
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Flavor Boost: For an extra kick, try adding extra spices like nutmeg or ginger for a warm, autumn flavor in your Pumpkin Morning Glory Muffins.
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Storage Tips: Store any leftovers in an airtight container at room temperature for up to 3 days. For longer storage, freeze them for up to 3 months. Reheat before serving for best results!

Pumpkin Morning Glory Muffins Recipe FAQs
How do I select ripe ingredients for my Pumpkin Morning Glory Muffins?
Absolutely! For the best flavor and texture, choose ripe apples and carrots. Look for apples that are firm and fragrant, and carrots without any dark spots or signs of wilting. The fresher the ingredients, the more delicious your muffins will be!
What is the best way to store leftover Pumpkin Morning Glory Muffins?
You can store your muffins in an airtight container at room temperature for up to 3 days. If you want to keep them longer, consider refrigerating them for up to a week, but ensure they are sealed tightly to maintain their moisture and flavor.
Can I freeze Pumpkin Morning Glory Muffins? If so, how?
Definitely! To freeze, wrap each muffin individually in plastic wrap and place them in a freezer-safe bag. They can be stored in the freezer for up to 3 months. When you’re ready to enjoy one, simply reheat it in the microwave for about 15-20 seconds or in a toaster oven until warmed through for that fresh-baked taste!
What should I do if my muffins aren’t rising properly?
Very likely, overmixing could be the culprit! If you notice your muffins are dense instead of light and fluffy, it may be due to gluten overdevelopment from too much mixing. Always fold the dry ingredients into the wet just until combined, and check your baking powder and baking soda for freshness—old leavening agents can hinder the rise.
Are Pumpkin Morning Glory Muffins suitable for my pet?
It’s best to avoid giving these muffins to pets. While ingredients like pumpkin can be safe for dogs, the added sugars, spices, and nuts may not be suitable for them. Stick to pet-friendly treats to keep them safe and healthy!
Can I make substitutions for allergens in the recipe?
Absolutely! If you have nut allergies, you can omit the pecans or substitute them with seeds like sunflower seeds. For a gluten-free option, substitute almond flour for the whole wheat and all-purpose flour. Additionally, you can replace the applesauce with mashed bananas if you’re avoiding apples. These muffins are very adaptable!

Pumpkin Morning Glory Muffins: A Cozy Fall Breakfast Treat
Ingredients
Equipment
Method
- Preheat your oven to 400°F (200°C) and line a 12-cup muffin tin with paper liners.
- In a medium bowl, whisk together the whole wheat flour, all-purpose flour, light brown sugar, baking powder, baking soda, pumpkin spice, cinnamon, and salt.
- In a large bowl, whisk together the pumpkin puree, unsweetened applesauce, melted coconut oil, shredded apple, vanilla extract, and grated carrot.
- Gradually fold the dry ingredients into the wet ingredients, stirring gently with a spatula.
- Gently fold in the dried cranberries, flaked coconut, and chopped pecans until evenly distributed.
- Divide the batter evenly among the prepared muffin cups, filling each about two-thirds full.
- Bake for 24 to 28 minutes, checking for doneness with a toothpick.
- Allow the muffins to cool in the pan for about 10 minutes before transferring to a wire rack to cool completely.

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