The aroma of pumpkin spice wafting through the kitchen brings me right back to my childhood, where holiday treats were like little treasures waiting to be discovered. This year, I’m excited to share my Skinny Mini Pumpkin Cheesecakes, a wholesome twist on a seasonal favorite. Not only are they gluten-free and refined sugar-free, but they’re also a guilt-free delight that promises to satisfy your sweet tooth. Each mini cheesecake features a smooth, creamy filling nestled in a crunchy pecan crust, making them perfect for entertaining or cozy family gatherings. They’re quick to whip up and add a festive flair to any dessert table, ensuring everyone feels included in the holiday spirit. Ready to treat yourself to a lightened-up version of your favorite fall dessert? Let’s dive into this delicious recipe together!

Why are these cheesecakes so delightful?
Guilt-Free Indulgence: These Skinny Mini Pumpkin Cheesecakes deliver all the deliciousness without the extra calories.
Festive Flavors: Enjoy the warm essence of pumpkin spice that fills your home with holiday cheer.
Simple Preparation: With minimal prep time, you’ll have these tasty treats ready for any gathering in no time.
Crowd-Pleasing Appeal: Their adorable size makes them the perfect dessert for parties, ensuring every guest has room for a sweet bite.
Versatile Variations: Customize your cheesecakes by swapping pecans for walnuts or maple syrup for brown sugar—endless possibilities await!
Get inspired to create more delightful desserts like Mini Chocolate Cheesecake Bites to impress your guests!
Skinny Mini Pumpkin Cheesecakes Ingredients
For the Crust
- Pecans – Adds a delightful crunch and nutty flavor; substitute walnuts if preferred.
- Maple Syrup or Honey – Acts as a natural sweetener for both the crust and filling; brown sugar can be swapped in if needed.
- Water – Binds the pecan crust mixture together; no substitutions required.
- Butter (melted) – Provides richness and flavor; you can use either unsalted or salted butter.
For the Cheesecake Filling
- Reduced Fat Cream Cheese – Contributes creaminess to the filling; regular cream cheese is a substitute but less healthy.
- Greek Yogurt (plain, 2% preferred) – Adds creaminess and protein, ensuring a luscious texture; steer clear of flavored yogurts.
- Pumpkin Puree – The star ingredient for that classic pumpkin flavor; make sure to use pure pumpkin puree.
- Pumpkin Spice – Essential for that warm, inviting spice flavor; if you don’t have it, mix cinnamon, ginger, nutmeg, allspice, and cloves.
- Vanilla Extract – Enhances the cheesecake’s flavor; opt for pure vanilla extract for the best taste.
- Egg – Binds the filling together; this key ingredient should not be substituted.
Ready for a delicious journey with these Skinny Mini Pumpkin Cheesecakes? Let’s get baking!
Step‑by‑Step Instructions for Skinny Mini Pumpkin Cheesecakes
Step 1: Preheat the Oven
Begin by preheating your oven to 325°F (163°C). This ensures that your Skinny Mini Pumpkin Cheesecakes will bake evenly from the start. Preheating is key, so set your timer for a few minutes and let that oven warm up while you prepare the muffin tin and crust.
Step 2: Prepare Muffin Tin
Line a muffin tin with cupcake liners, ensuring they are well-placed. To prevent sticking, lightly spray each liner with non-stick spray. This step is crucial for easy removal later and helps to keep your mini cheesecakes intact and looking beautiful when served.
Step 3: Make Pecan Crust
In a mixing bowl, combine finely chopped pecans, maple syrup (or honey), melted butter, and water. Stir until the ingredients form a cohesive mixture. Use your fingers or a small spoon to press this mixture evenly into the bottom of each cupcake liner, creating a firm crust that will add delightful crunch to your Skinny Mini Pumpkin Cheesecakes.
Step 4: Bake Crust
Place the muffin tin in the oven and bake the pecan crust for 13-14 minutes, until it is slightly brown and firm to the touch. Keep an eye on them while they bake; you want that golden hue without overdoing it. This step prepares a solid base for your creamy filling.
Step 5: Mix Pumpkin Cheese Filling
While the crust is baking, prepare your cheesecake filling. In a large bowl, beat the room-temperature reduced fat cream cheese until smooth. Gradually mix in the Greek yogurt, pumpkin puree, maple syrup (or honey), pumpkin spice, vanilla extract, and egg. Blend until just combined—don’t overmix to avoid adding too much air, which can lead to cracking.
Step 6: Fill Cupcake Liners
Once your crusts are baked and slightly cooled, carefully pour the creamy cheesecake mixture over each crust, filling them almost to the top. Use a spatula to smooth the tops for an even finish, which will showcase the lovely presentation of your Skinny Mini Pumpkin Cheesecakes after baking.
Step 7: Bake Cheesecakes
Increase your oven temperature to 350°F (175°C) and return the muffin tin to bake for 17-20 minutes. Watch for the centers to jiggle slightly but not be overly liquid; a slight wobble indicates they are perfectly done. This gentle baking allows the filling to set while keeping it creamy and delicious.
Step 8: Cool
Remove the muffin tin from the oven and allow the cheesecakes to cool at room temperature for about 30 minutes. This cooling period is essential for setting the texture. Afterwards, transfer them to the refrigerator to chill completely for at least 2 hours, letting the flavors meld together delightfully.
Step 9: Serve
Once your Skinny Mini Pumpkin Cheesecakes are chilled, they are ready to be served. Top each mini cheesecake with cool whip and a sprinkle of additional pecans for an appealing finish. These little delights are perfect for sharing and will surely be a hit at your holiday gatherings!

Expert Tips for Skinny Mini Pumpkin Cheesecakes
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Room Temperature Cream Cheese: Ensure your cream cheese is at room temperature for easier mixing, which helps achieve a smooth filling without lumps.
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Avoid Overmixing: Mix the filling only until combined after adding the egg to prevent overbeating, which can cause cracks in your Skinny Mini Pumpkin Cheesecakes.
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Cool Properly: Allow the cheesecakes to cool at room temperature before refrigerating; this helps them set properly and prevents sinking.
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Perfectly Timed Baking: Bake the filling until it jiggles slightly in the center; this ensures a creamy texture instead of a dry one.
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Serve with Flair: Enhance presentation by topping with cool whip and an extra sprinkle of pecans; this adds flavor and visual appeal to your desserts.
How to Store and Freeze Skinny Mini Pumpkin Cheesecakes
Fridge: Store your mini cheesecakes in an airtight container for up to 5-6 days. This keeps them fresh and ready to enjoy whenever you crave a delicious treat.
Freezer: If you want to enjoy these desserts later, freeze them in a single layer on a baking sheet. Once frozen, transfer to an airtight container and enjoy within 2-3 months for optimal flavor.
Thawing: To thaw, simply place the frozen Skinny Mini Pumpkin Cheesecakes in the fridge overnight. Enjoy them cold or let them sit at room temperature for about 30 minutes before serving.
Reheating: If you prefer your cheesecakes slightly warm, gently reheat in the microwave for 10-15 seconds. This enhances the creamy texture and flavor without compromising quality.
What to Serve with Skinny Mini Pumpkin Cheesecakes
The perfect balance of flavors and textures makes these little delights truly special for any gathering.
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Cinnamon Whipped Cream: This light and airy topping enhances the pumpkin spice flavor, bringing an extra layer of warmth to each bite. A dollop on top perfectly complements the mini cheesecakes.
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Spiced Apple Cider: Sipping on warm or chilled spiced apple cider echoes the fall flavors, making it a cozy drink to enjoy alongside this dessert. It’s a classic pairing that speaks to the season.
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Candied Pecans: Adding a crunchy, sweet note, candied pecans can be sprinkled on top or served on the side for a delightful crunch. They elevate the flavor profile, ensuring every bite is memorable!
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Chocolate Drizzle: A rich chocolate drizzle can turn these cheesecakes into a decadent experience. The bittersweet contrast pairs wonderfully with the creamy pumpkin filling, satisfying both chocolate and pumpkin lovers alike.
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Vanilla Ice Cream: Creamy and cool, a scoop of vanilla ice cream on the side offers a refreshing contrast to the warmth of the cheesecakes. It’s a classic combination that everyone will love!
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Pumpkin Spice Latte: For an extra festive touch, serve a steaming pumpkin spice latte alongside these cheesecakes. It’ll enhance the cozy atmosphere and reinforce that delightful coffee-house vibe at your gathering.
Feel free to mix and match these ideas to create the ideal dessert experience for your friends and family!
Skinny Mini Pumpkin Cheesecakes Variations
Inviting creativity into your kitchen can transform these delightful treats into even more unique delights for your gatherings.
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Nut-Free: Use sunflower seeds or pumpkin seeds for the crust instead of nuts, offering a crunchy alternative without allergens.
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Dairy-Free: Substitute the reduced fat cream cheese and Greek yogurt with plant-based cream cheese and coconut yogurt for a vegan-friendly option. This keeps the creamy texture intact while being kind to your dairy-free friends.
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Sugar-Free: Replace maple syrup with a suitable sugar-free sweetener like erythritol or stevia for those watching their sugar intake. This swap ensures you won’t miss out on sweetness while keeping it low-calorie.
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Spicy Kick: Add a dash of cayenne pepper or chili powder to the cheesecake filling for a surprising heat that balances beautifully with the sweetness. It’s a fun twist that will have your guests talking!
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Chocolate Lovers: Incorporate cocoa powder into the filling for a chocolatey version of these cheesecakes. You can even drizzle the top with melted dark chocolate to add an extra layer of indulgence.
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Pumpkin Power: Boost the pumpkin flavor by adding a bit more pumpkin puree or using pumpkin pie filling for an extra spice blend. This will deepen the fall vibes and satisfy those pumpkin cravings!
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Gourmet Toppings: Top your cheesecakes with a dollop of homemade caramel sauce or a sprinkle of crushed gingerbread cookies to elevate your presentation. Adding layers of flavor and texture enhances every bite.
Feeling inspired? There’s always room to experiment, just like when I whip up a batch of my Mini Chocolate Cheesecake Bites to delight friends and family. Why not make every dessert a little more special?
Make Ahead Options
These Skinny Mini Pumpkin Cheesecakes are perfect for busy home cooks looking to save time during the holiday season! You can prepare the pecan crust up to 24 hours in advance; simply store it in the refrigerator to keep it fresh and firm. Additionally, the cheesecake filling can be mixed and stored in an airtight container for up to 3 days before you’re ready to bake. To maintain the quality, ensure both components are well covered to prevent drying out. When you’re ready to serve, fill the prepared crusts with the cheesecake mixture and bake as directed. In no time, you’ll have delicious mini pumpkin cheesecakes that are just as delightful as if made fresh!

Skinny Mini Pumpkin Cheesecakes Recipe FAQs
How do I choose ripe pumpkins for pumpkin puree?
Absolutely! When selecting pumpkins for pumpkin puree, look for smaller varieties like sugar pumpkins or pie pumpkins rather than larger carving pumpkins, as they have a sweeter flavor and smoother texture. Choose pumpkins that are firm, heavy for their size, and free of dark spots or blemishes to ensure optimal ripeness.
How long can I store my Skinny Mini Pumpkin Cheesecakes in the refrigerator?
These mini cheesecakes can be stored in an airtight container in the refrigerator for up to 5-6 days. I often make them ahead of time for gatherings, and they taste fresh and delicious throughout the week! Just remember to keep them sealed to maintain their creamy texture and flavor.
Can I freeze Skinny Mini Pumpkin Cheesecakes?
Yes, indeed! To freeze these delightful treats, start by placing them in a single layer on a baking sheet to freeze until solid, about 1-2 hours. Then, transfer them to an airtight container or a freezer-safe bag, and they can last for up to 2-3 months. For the best taste, try to consume them within this period!
How do I properly thaw frozen mini cheesecakes?
To thaw your frozen Skinny Mini Pumpkin Cheesecakes, simply place them in the refrigerator overnight, allowing them to come to the perfect serving temperature. If you’re short on time, you can let them sit at room temperature for about 30 minutes. They’re just as delicious chilled or slightly warmed!
Are these cheesecakes safe for people with nut allergies?
These Skinny Mini Pumpkin Cheesecakes contain pecans, which can be a concern for those with nut allergies. As an alternative, you could replace the pecans with crushed gluten-free cookie crumbs, such as Digestive biscuits or graham crackers, for the crust while maintaining the deliciousness of the cheesecake filling.
What can I do if my cheesecakes crack while baking?
Very commonly, cracking occurs due to overmixing or baking at a high temperature. To avoid this, be sure to mix the filling until just combined after adding the egg, and keep an eye on the baking process. If cracks do occur, don’t worry too much—toppings like cool whip and pecans can easily disguise them!

Deliciously Guilt-Free Skinny Mini Pumpkin Cheesecakes
Ingredients
Equipment
Method
- Preheat your oven to 325°F (163°C).
- Line a muffin tin with cupcake liners and lightly spray each liner with non-stick spray.
- In a mixing bowl, combine finely chopped pecans, maple syrup, melted butter, and water. Press this mixture evenly into the bottom of each cupcake liner.
- Bake the pecan crust for 13-14 minutes until slightly brown and firm to the touch.
- Beat the room-temperature reduced fat cream cheese until smooth. Gradually mix in the Greek yogurt, pumpkin puree, maple syrup, pumpkin spice, vanilla extract, and egg until just combined.
- Carefully pour the creamy cheesecake mixture over each crust, filling them almost to the top. Smooth the tops for an even finish.
- Increase your oven temperature to 350°F (175°C) and bake for 17-20 minutes until the centers jiggle slightly.
- Allow the cheesecakes to cool at room temperature for about 30 minutes before transferring to the refrigerator to chill completely for at least 2 hours.
- Serve your chilled Mini Pumpkin Cheesecakes topped with cool whip and a sprinkle of additional pecans.

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